DNA metabarcoding focusing on the plankton community: an effective approach to reconstruct the paleo-environment.

DNA metabarcoding (DNA-MB) targeting the whole plankton community is a promising approach in studies of sediment samples from water bodies, but its effectiveness in ancient material is not well demonstrated. We applied DNA-MB of plankton in a sediment core to reconstruct the paleo-environment of Lake Shinji, Japan, through a marine lagoon/freshwater lake transition during the past 2300 years. We interpreted core-sample plankton taxonomy and habitat by reference to the modern plankton community in water samples. OTUs (operational taxonomic units) belonging to Dictyochophyceae were 81.05% of the total reads in sediments. However, Ciliophora, Copepoda and Labyrinthulea formed the majority of plankton taxa in the water samples, suggesting that they are under-represented in sediment. A drastic change in plankton composition correlated with a large decrease in sediment sulfur concentration, implying the change of aquatic environment from marine lagoon to freshwater lake. This event took place ca. 1200 CE in Lake Shinji. A 250 year-long transitional period followed, during which the total DNA sequence reads were very low. This suggests that salinity fluctuations created a hostile environment for both marine and freshwater plankton species. Our results show that DNA-MB of the whole plankton community is effective in reconstructing paleo-environments.

Amino accelerators and antioxidants in sediments from the Dong Nai River System, Vietnam: Distribution and influential factors.

Amino accelerators and antioxidants (AAL/Os) have become a suite of contaminants of emerging concern recently due to the accumulating evidence for their environmental occurrence and associated toxic potential. Nevertheless, data on sedimentary deposition of AAL/Os has remained scarce, particularly for regions beyond the North America. In the present study, we elucidated spatial distribution of fifteen AAL/Os and five AAO transformation products (AAOTPs) in seventy-seven sediments from the Dong Nai River System (DNRS), Vietnam. Total concentrations of AAL/Os (∑AAL/Os) ranged from 0.377 to 51.4 ng/g (median: 5.01 ng/g). 1,3-Diphenylguanidine and 4,4'-bis(1,1-dimethylbenzyl) diphenylamine were the two most prevalent congeners, both with detection frequencies >80%. Additionally, AAOTPs were quantifiable in 79% of the DNRS sediments with a median ∑AAOTPs at 2.19 ng/g, dominated by N, N'-diphenylbenzidine and 2-nitrodiphenylamine. Higher sediment-associated levels of AAL/Os and AAOTPs were spotted in downstream and the primary tributary of the DNRS compared to the upstream, implying their cumulative sedimentation towards the estuarine region. The distribution patterns of AAL/Os and AAOTPs across individual transects also demonstrated the influence of human activities (e.g., urbanization and agriculture), hydrodynamics, and decontamination by mangrove reserves. Meanwhile, characteristics of sediments, i.e., total organic carbon (TOC) content and grain sizes, exhibited significant correlations with the burdens of these compounds, indicating their preferential partitioning into the fine and TOC-rich matter. This research sheds light on environmental behavior of AAL/Os and AAOTPs beneath Asian aquatic system, and highlights the need for further evaluation of their impacts on the wildlife and public health.

Did the modern Yellow River form at the Mid-Pleistocene transition?

The incision of the Sanmen Gorge marks the birth of the modern Yellow River, but its timing varies from the late Miocene-early Pliocene to the late Pleistocene (∼0.15 Ma), and the suggested forcing mechanisms vary from the uplift of the Tibetan Plateau to global climate change. Here, we report sedimentologic, geochronologic, and provenance data from a drill core near the Sanmen Gorge, the last gorge along the main course of the Yellow River. Our results indicate that typical river channel deposits, with detritus from the Ordos Block in the upstream regions, started to accumulate in the Sanmen Gorge at ∼1.25 Ma. When integrated with river terrace evidence from the upstream and downstream regions, the results provide robust evidence that the final integration of the modern Yellow River occurred at ∼1.25 Ma, consistent with the beginning of the Mid-Pleistocene transition (MPT). We propose that the accelerated lowering of eustatic sea level during the MPT may play as important a role as tectonism in driving the birth and evolution of the modern Yellow River.

Downregulation of IGFBP5 contributes to replicative senescence via ERK2 activation in mouse embryonic fibroblasts.

Insulin-like growth factor (IGF)-binding proteins (IGFBPs) are secretory proteins that regulate IGF signaling. In this study, we investigated the role of IGFBP5 in replicative senescence in embryonic mouse fibroblasts (MEFs). During passages according to the 3T3 method, MEFs underwent senescence after the 5th passage (P5) based on cell growth arrest, an increase in the number of cells positive for senescence-associated ß-galactosidase (SA-ß-GAL) staining, and upregulation of p16 and p19. In P8 MEFs, IGFBP5 mRNA level was markedly reduced compared with that in P2 MEFs. Downregulation of IGFBP5 via siRNA in P2 MEFs increased the number of SA-ß-GAL-positive cells, upregulated p16 and p19, and inhibited cell growth. Incubation of MEFs with IGFBP5 during serial passage increased the cumulative population doubling and decreased SA-ß-GAL positivity compared with those in vehicle-treated cells. IGFBP5 knockdown in P2 MEFs increased phosphorylation levels of ERK1 and ERK2. Silencing of ERK2, but not that of ERK1, blocked the increase in the number of SA-ß-GAL-positive cells in IGFBP5-knockdown cells. The reduction in the cell number and upregulation of p16 and p21 in IGFBP5-knockdown cells were attenuated by ERK2 knockdown. Our results suggest that downregulation of IGFBP5 during serial passage contributes to replicative senescence via ERK2 in MEFs.

A case of monosomy 21 presented with difficult tracheal intubation.

BACKGROUND: Monosomy 21 is a rare chromosomal abnormality. It is mainly associated with mental retardation, intellectual disability, growth retardation, microcephaly, and characteristic facial features. General anesthesia in adults with this disease has not been reported. We report difficult airway management of an adult patient with monosomy 21. CASE DESCRIPTION: A 30-year-old female was scheduled for laparoscopic gynecological surgery. She was diagnosed with monosomy 21 at birth and accompanied with mental retardation. Preoperative examination revealed limited mouth opening with Mallampati score of IV, but no abnormal laboratory test or chest X-P. Anesthesia was performed using general anesthesia with epidural analgesia. Although bag-mask ventilation was improved by a muscle relaxant, mouth opening was further restricted, and laryngoscope insertion was impossible. Tracheal intubation was achieved using a bronchofiberscope. The operation procedure was completed, and the patient was discharged from the hospital without any major postoperative complications. CONCLUSIONS: In this patient, mouth opening was further reduced after induction of general anesthesia with a muscle relaxant. Preoperative evaluation and adequate preparation of airway management are important for general anesthesia in an adult patient with monosomy 21.

Distribution of organophosphate esters influenced by human activities and fluvial-tidal interactions in the Dong Nai River System, Vietnam.

Limited information is known about organophosphate esters (OPEs) in sediments of the Dong Nai River System (DNRS) in Vietnam and the influences of complex hydro-sedimentary dynamics on their fate. In this study, 48 surface sediment samples were collected from the Dong Nai-Soai Rap River and its tributary Vam Co River for the determination of 11 target OPEs, together with grain size and total organic carbon (TOC). The total concentrations of OPEs were in the range of 39.4 ng/g dw-373 ng/g dw (mean: 128 ng/g dw), and tris(1-chloro-2-propyl) phosphate (TCPP) was the predominant one with an average contribution of 81%, followed by tri-n-butyl phosphate (TNBP), tris(2-ethylhexyl) phosphate (TEHP). The composition profiles of OPEs at different locations of the DNRS showed no significant differences (p > 0.05). In addition, the distribution of OPEs had been influenced by both human activities and the fluvial-tidal interactions. The highly frequent and various human activities in Ho Chi Minh City (HCMC) leaded to the highest total concentration of OPEs in the midstream site. Based on our dataset, TOC content and grain size of sediments had significant correlation with certain OPEs (p < 0.05), and sediments with higher TOC content and finer grain size in the DNRS were more likely to be deposited in the downstream reach, contributing to the estuary of the DNRS was identified as another hotspot with the second highest concentration of OPEs. Furthermore, the distribution of OPEs in the transects had distinct characteristics, which reflected the joint influence of the human activities and fluvial-tidal interaction as well. However, the mechanism of their influence needed further investigation.

Abandonment and rapid infilling of a tide-dominated distributary channel at 0.7 ka in the Mekong River Delta.

The Ba Lai distributary channel of the Mekong River Delta was abandoned and infilled with sediment during the Late Holocene, providing a unique opportunity to investigate the sediment fill, timing and mechanisms of channel abandonment in tide-dominated deltaic systems. Based on analysis and age dating of four sediment cores, we show that the channel was active since 2.6 ka and was abandoned at 0.7 ka as marked by the abrupt disappearance of the sand fraction and increase in organic matter and sediment accumulation rate. We estimate that the channel might have been filled in a time range of 45-263 years after detachment from the deltaic network, with sediment accumulation rates of centimetres to decimetres per year, rapidly storing approximately 600 Mt of organic-rich mud. We suggest that the channel was abandoned due to a sediment buildup favoured by an increase in regional sediment supply to the delta. This study highlights that mechanisms for abandonment and infilling of tide-dominated deltaic channels do not entirely fit widely used models developed for fluvial-dominated environments. Their abandonment might be driven by autogenic factors related to the river-tidal and deltaic dynamics and favoured by allogenic factors (e.g., human impact and/or climate change).

The 2011 Tohoku-oki tsunami-induced sediment remobilization on the Sendai shelf, Japan, from a comparison of pre- and post-tsunami surface sediments.

Tsunamis are generally considered to disturb the seafloor, rework surface sediments, and change seafloor environments. However, the response of the seafloor to such extreme wave events has not been fully elucidated. Herein, we compare the surface sediments before and after the 2011 Tohoku-oki tsunami on the Sendai shelf and demonstrate that both sandy and muddy sediments were significantly reworked on the shelf. Muddy sediments (> 10 cm thick) were redeposited as graded mud with no or little bioturbation, characterizing the offshore muddy tsunami deposit, while well-sorted sand was found as the sandy tsunami deposit. This redeposited layer could also be retained in the shelf mud sequence. The results imply that the high friction velocity of the tsunami wave and its long-term effect on Sendai Bay might contribute to the large sediment reworking. Part of the resuspended mud moved offshore to the slope area as turbidity currents. Thus, the tsunami is an important mechanism not only for shelf sedimentation but also for deep-sea sedimentation along active plate margins. The detection of 134Cs derived from the Fukushima Daiichi Nuclear Power Plant accident in the redeposited mud indicates that the suspended shelf water state was maintained for some days after the tsunami.

Anthropogenic impacts on the decreasing sediment loads of nine major rivers in China, 1954-2015.

Over the past 60 years, because of the combined impacts of human activities and climate change, the sediment load of the nine major rivers (the Yellow, Yangtze, Pearl, Songhuajiang, Liaohe, Haihe, Huaihe, Qiantangjiang, and Minjiang rivers) in China has dropped by 85%, which had caused serious environmental problems such as reservoir siltation and estuary erosion. However, quantitatively evaluating the impact of different human activities on this decline is still an unsolved and complex problem. Based on a big new data set from 27 gauge stations and 469 meteorological stations, we established five methods to assess sediment loss of China's nine major rivers. During 1954-2015, the sediment load into the marginal seas via these nine rivers was characterized by a marked decline, from 1.95 Gt/yr (1954-1968) to 1.40 Gt/yr (1969-1985), 890 Mt/yr (1986-1998), 450 Mt/yr (1999-2003), and 310 Mt/yr (2004-2015), reflecting an 85% decrease between 1954-1968 and 2004-2015. The cumulative sediment load into the marginal seas was ~71.0 Gt, constituting ~7% of the global sediment load. The Yellow River, Yangtze River, Pearl River, and other six major rivers contributed 40.9 (58%), 22.9 (32%), 4.1 (6%), and 2.96 Gt (4%), respectively. We estimate that ~53.0 Gt of terrestrial sediment has been retained on the mainland China because of human activities, with reservoir trapping, water resource utilization, and water-soil conservation measures accounting for 45.5%, 29%, and 25.5% of the total, respectively. The contribution of climatic factors was assessed to be secondary. This drastic reduction in river sediment load could lead to a series of negative effects on deltas: decreased sediment delivery, coastal erosion, aggravated reaction to storm disasters, and most importantly, loss of new land for human use. In addition, the large amounts of sediment trapping by reservoirs over long periods will cause siltation that could reduce reservoir water storage capacity.

Long-term sediment decline causes ongoing shrinkage of the Mekong megadelta, Vietnam.

Since the 1990s the Mekong River delta has suffered a large decline in sediment supply causing coastal erosion, following catchment disturbance through hydropower dam construction and sand extraction. However, our new geological reconstruction of 2500-years of delta shoreline changes show that serious coastal erosion actually started much earlier. Data shows the sandy coast bounding river mouths accreted consistently at a rate of +2 to +4 km2/year. In contrast, we identified a variable accretion rate of the muddy deltaic protrusion at Camau; it was < +1 km2/year before 1400 years ago but increased drastically around 600 years ago, forming the entire Camau Peninsula. This high level of mud supply had sharply declined by the early 20th century after a vast canal network was built on the delta. Since then the Peninsula has been eroding, promoted by the conjunction of mud sequestration in the delta plain driven by expansion of rice cultivation, and hysteresis of long-term muddy sedimentation that left the protrusion exposed to wave erosion. Natural mitigation would require substantial increases in sediment supply well above the pre-1990s levels.

Electrical detection SPR sensor with grating coupled backside illumination.

A current detection surface plasmon resonance (SPR) sensor with an Au grating on an n-Si wafer was proposed. SPR excitation light is illuminated from the backside of the device and diffracted by the grating. Since the diffraction provides matching conditions, SPR can be coupled to the Au/analyte interface. Since the coupled SPR excites free electrons on the Au surface, the SPR can be detected as a current signal by a Schottky barrier diode formed on the Au/n-Si interface. The obtained angular current spectrum showed clear agreement with SPR coupling theory, thereby confirming that the sample on the Au surface can be electrically detected using the proposed sensor.

Impact of human activities on subaqueous topographic change in Lingding Bay of the Pearl River estuary, China, during 1955-2013.

Estuaries have been sites of intensive human activities during the past century. Tracing the evolution of subaqueous topography in estuaries on a decadal timescale enables us to understand the effects of human activities on estuaries. Bathymetric data from 1955 to 2010 show that land reclamation decreased the subaqueous area of Lingding Bay, in the Pearl River estuary, by ~170 km2 and decreased its water volume by 615 × 106 m3, representing a net decrease of 11.2 × 106 m3 per year and indicating the deposition of approximately 14.5 Mt/yr of sediment in Lingding Bay during that period. Whereas Lingding Bay was mainly governed by natural processes with slight net deposition before 1980, subsequent dredging and large port engineering projects changed the subaqueous topography of the bay by shallowing its shoals and deepening its troughs. Between 2012 and 2013, continuous dredging and a surge of sand excavation resulted in local changes in water depth of ± 5 m/yr, far exceeding the magnitude of natural topographic evolution in Lingding Bay. Reclamation, dredging, and navigation-channel projects removed 8.4 Mt/yr of sediment from Lingding Bay, representing 29% of the sediment input to the bay, and these activities have increased recently.

Amino group PEGylation of bovine lactoferrin by linear polyethylene glycol-p-nitrophenyl active esters.

PEGylation, the covalent attachment of polyethylene glycol (PEG) to pharmaceutical proteins, is regarded as an extremely useful procedure to generate protein drugs with intensified therapeutic properties. We examined the amino group modification of bovine lactoferrin (bLF) with linear PEG-p-nitrophenyl active esters. At pH 5.0, we specifically observed the formation of mono-PEGylated bLF in high yields. PEG-conjugation reactions advanced slowly and reached a steady state by 48 h in a buffer at pH 5.0. The hydrolysis half-lives of 5-kDa and 30-kDa PEG-p-nitrophenyl active esters at pH 5.0 were estimated to be approximately 117 and 136 h, respectively. The slow reaction and hydrolysis rates of PEG-p-nitrophenyl active esters may contribute to the formation of mono-PEGylated bLF that could not be obtained by PEGylation with linear N-hydroxysuccinimide (NHS) activated PEG.

Warfare rather than agriculture as a critical influence on fires in the late Holocene, inferred from northern Vietnam.

Fire has played an essential role in the development of human civilization. Most previous research suggests that frequent-fire regimes in the late Holocene were associated with intensification of human activities, especially agriculture development. Here, we analyze fire regimes recorded in the Song Hong delta area of Vietnam over the past 5,000 years. In the prehistoric period, 2 long-term, low-charcoal abundance periods have been linked to periods of low humidity and cool climate, and 5 short-term fire regimes of 100-150 years in duration occurred at regular intervals of approximately 700 years. However, over the last 1,500 years, the number, frequency, and intensity of fire regimes clearly increased. Six intensified-fire regime periods in northern Vietnam during this time coincided with changes of Vietnamese dynasties and associated warfare and unrest. In contrast, agricultural development supported by rulers of stable societies at this time does not show a positive correlation with intensified-fire regime periods. Thus, warfare rather than agriculture appears to have been a critical factor contributing to fire regimes in northern Vietnam during the late Holocene.